There are many good online tutorials. Robert Feranec, Phil Salmony of Phil's Lab are two. Dave Jones of EEVblog has some Altium-based (but generally useful) tutorials covering production-oriented topics like panelization and fiducials. You should also study the recommended layout for things that are more fussy than LEDs such as switchmode converters and RF circuits.
You'll find there are many ways of getting to the end result, especially when it comes to library organization and how you deal with different components. Some approaches put more work up-front and others are more oriented to getting to the result fast. If you take the time to find or create accurate 3D models for major components you can help avoid mechanical problems by using a full PCB model in the MCAD modelling, and create beautiful rendering for documentation, but that might greatly increase the total time the first time you have to use a new set of components.
For simple boards, I suggest starting by doing some tutorials and using KiCad and just having some boards made. They are incredibly cheap these days (especially for simple 2 and even 4-layer boards) if you're not in a great hurry, and there's nothing like actually seeing and soldering to the results even if it isn't perfect. The inexpensive vendors have decent online checking for major issues and will generally make pretty much what you ask for (which does not always equal what you actually want).
Phil's Lab covers much of what even an advanced hobbyist or more might want to do.
Hardware design - designing the circuit that you want to put down onto a PCB is a much more involved topic. Even though you have an Engineering degree, there is still much to be learned, but between app notes, tutorials, books, and even advanced courses you can get there and have fun on the way.